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General Biology in Context

General Biology in Context

Learning all about micro-organism in my Biology center

plant cell wall

 

One of the most important distinguishing features of plant cells is the presence of a cell wall. The relative rigidity of the cell wall renders plants sedentary, unlike animals, whose lack of this type of structure allows their cells more flexibility, which is necessary for locomotion. The plant cell wall serves a variety of functions. Along with protecting the intracellular contents, the structure bestows rigidity to the plant, provides a porous medium for the circulation and distribution of water, minerals, and other nutrients, and houses specialized molecules that regulate growth and protect the plant from disease.

 

Plant Cell Wall Structure

 

Cell walls are significantly thicker than plasma membranes and were visible even to early microscopists, including Robert Hooke, who originally identified the structures in a sample of cork, and then coined the term cells in the 1660s. The thickness, as well as the composition and organization, of cell walls can vary significantly. Many plant cells have both a primary cell wall, which accommodates the cell as it grows, and a secondary cell wall they develop inside the primary wall after the cell has stopped growing. The primary cell wall is thinner and more pliant than the secondary cell wall, and is sometimes retained in an unchanged or slightly modified state without the addition of the secondary wall, even after the growth process has ended.

The main chemical components of the primary plant cell wall include cellulose (in the form of organized microfibrils; see Figure 1), a complex carbohydrate made up of several thousand glucose molecules linked end to end. In addition, the cell wall contains two groups of branched polysaccharides, the pectins and cross-linking glycans. Organized into a network with the cellulose microfibrils, the cross-linking glycans increase the tensile strength of the cellulose, whereas the coextensive network of pectins provides the cell wall with the ability to resist compression. In addition to these networks, a small amount of protein can be found in all plant primary cell walls. Some of this protein is thought to increase mechanical strength and part of it consists of enzymes, which initiate reactions that form, remodel, or breakdown the structural networks of the wall. Such changes in the cell wall directed by enzymes are particularly important for fruit to ripen and leaves to fall in autumn.

The secondary plant cell wall, which is often deposited inside the primary cell wall as a cell matures, sometimes has a composition nearly identical to that of the earlier-developed wall. More commonly, however, additional substances, especially lignin, are found in the secondary wall. Lignin is the general name for a group of polymers of aromatic alcohols that are hard and impart considerable strength to the structure of the secondary wall. Lignin is what provides the favorable characteristics of wood to the fiber cells of woody tissues and is also common in the secondary walls of xylem vessels, which are central in providing structural support to plants. Lignin also makes plant cell walls less vulnerable to attack by fungi or bacteria, as do cutin, suberin, and other waxy materials that are sometimes found in plant cell walls.

A specialized region associated with the cell walls of plants, and sometimes considered an additional component of them, is the middle lamella (see Figure 1). Rich in pectins, the middle lamella is shared by neighboring cells and cements them firmly together. Positioned in such a manner, cells are able to communicate with one another and share their contents through special conduits. Termed plasmodesmata, these small passages penetrate the middle lamella as well as the primary and secondary cell walls, providing pathways for transporting cytoplasmic molecules from one cell to another.

 

 

 

plant cell wall in persion

refer to continues part


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plant cell organisms in brief

 

 

Anatomy of the Plant Cell 

  •  

  • Cell Wall - Like their prokaryotic ancestors, plant cells have a rigid wall surrounding the plasma membrane. It is a far more complex structure, however, and serves a variety of functions, from protecting the cell to regulating the life cycle of the plant organism.

  • Chloroplasts - The most important characteristic of plants is their ability to photosynthesize, in effect, to make their own food by converting light energy into chemical energy. This process is carried out in specialized organelles called chloroplasts.

  • Endoplasmic Reticulum - The endoplasmic reticulum is a network of sacs that manufactures, processes, and transports chemical compounds for use inside and outside of the cell. It is connected to the double-layered nuclear envelope, providing a pipeline between the nucleus and the cytoplasm. In plants, the endoplasmic reticulum also connects between cells via the plasmodesmata.

  • Golgi Apparatus - The Golgi apparatus is the distribution and shipping department for the cell's chemical products. It modifies proteins and fats built in the endoplasmic reticulum and prepares them for export as outside of the cell.

  • Microfilaments - Microfilaments are solid rods made of globular proteins called actin. These filaments are primarily structural in function and are an important component of the cytoskeleton.

  • Microtubules - These straight, hollow cylinders are found throughout the cytoplasm of all eukaryotic cells (prokaryotes don't have them) and carry out a variety of functions, ranging from transport to structural support.

  • Mitochondria - Mitochondria are oblong shaped organelles found in the cytoplasm of all eukaryotic cells. In plant cells, they break down carbohydrate and sugar molecules to provide energy, particularly when light isn't available for the chloroplasts to produce energy.

  • Nucleus - The nucleus is a highly specialized organelle that serves as the information processing and administrative center of the cell. This organelle has two major functions: it stores the cell's hereditary material, or DNA, and it coordinates the cell's activities, which include growth, intermediary metabolism, protein synthesis, and reproduction (cell division).

  • Peroxisomes - Microbodies are a diverse group of organelles that are found in the cytoplasm, roughly spherical and bound by a single membrane. There are several types of microbodies but peroxisomes are the most common.

  • Plasmodesmata - Plasmodesmata are small tubes that connect plant cells to each other, providing living bridges between cells.

  • Plasma Membrane - All living cells have a plasma membrane that encloses their contents. In prokaryotes and plants, the membrane is the inner layer of protection surrounded by a rigid cell wall. These membranes also regulate the passage of molecules in and out of the cells.

  • Ribosomes - All living cells contain ribosomes, tiny organelles composed of approximately 60 percent RNA and 40 percent protein. In eukaryotes, ribosomes are made of four strands of RNA. In prokaryotes, they consist of three strands of RNA.

  • Vacuole - Each plant cell has a large, single vacuole that stores compounds, helps in plant growth, and plays an important structural role for the plant.

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plant cell structure

 

 

Plants are unique among the eukaryotes, organisms whose cells have membrane-enclosed nuclei and organelles, because they can manufacture their own food. Chlorophyll, which gives plants their green color, enables them to use sunlight to convert water and carbon dioxide into sugars and carbohydrates, chemicals the cell uses for fuel. 

Like the fungi, another kingdom of eukaryotes, plant cells have retained the protective cell wall structure of their prokaryotic ancestors. The basic plant cell shares a similar construction motif with the typical eukaryote cell, but does not have centrioles, lysosomes, intermediate filaments, cilia, or flagella, as does the animal cell. Plant cells do, however, have a number of other specialized structures, including a rigid cell wall, central vacuole, plasmodesmata, and chloroplasts. Although plants (and their typical cells) are non-motile, some species produce gametes that do exhibit flagella and are, therefore, able to move about.

references:

http://micro.magnet.fsu.edu.

Three Main Types of Plants


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prokaryotic and eukaryotic cells

 

 

 

http://ocw.mit.edu/

 

All cellular life has the following characteristics in common

. 

  • All cells have a CELL MEMBRANE that separates the CHAOS outside a cell from the high degree of organization within the cell. A cell without a cell membrane is NOT A CELL.
  • All cellular life CONTAINS DNA as its genetic material. All cells contain several varieties of RNA molecules and PROTEINS, most of the latter are enzymes.
  • All cells are composed of the same BASIC CHEMICALS: carbohydrates, proteins, nucleic acids, minerals, fats and vitamins.
  • All cells REGULATE the flow of nutrients and wastes that enter and leave the cell.
  • All cells REPRODUCE and are the result of reproduction.
  • All cells require a SUPPLY OF ENERGY.
  • All cells are HIGHLY REGULATED by ELABORATE SENSING SYSTEMS (chemical "noses") that allow them to be aware of every reaction that is occurring within them and many of the environmental conditions around them; this information is continually PROCESSED to make metabolic decisions.
    • For example: Many flowers close up at night and open during the day. How do they know when the sun is up?
    • When you were developing in your mother's uterus how did the cell that eventually became your eyes know to turn into an eye and in the right place at the correct moment in fetal development and relative to the other cells around it that will be turning into something else?

    The major similarities between the two types of cells (prokaryote and eukaryote) are:

    1. They both have DNA as their genetic material.
    2. They are both membrane bound.
    3. They both have ribosomes .
    4. They have similar basic metabolism .
    5. They are both amazingly diverse in forms. 

     

    find out more about differences visit this website

  • http://www.biologymad.com/resources/AS%20Cells.pdf

  • ProkaryoticvsEukaryotic


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    Eukaryotic Organisms

     

     

    Eukaryotes include fungi, animals, and plants as well as some unicellular organisms. Eukaryotic cells are about 10 times the size of a prokaryote and can be as much as 1000 times greater in volume. The major and extremely significant difference between prokaryotes and eukaryotes is that eukaryotic cells contain membrane-bound compartments in which specific metabolic activities take place. Most important among these is the presence of a nucleus, a membrane-delineated compartment that houses the eukaryotic cell’s DNA. It is this nucleus that gives the eukaryote—literally, true nucleus—its name.

    Eukaryotic organisms also have other specialized structures, called organelles, which are small structures within cells that perform dedicated functions. As the name implies, you can think of organelles as small organs. There are a dozen different types of organelles commonly found in eukaryotic cells. In this primer, we will focus our attention on only a handful of organelles and will examine these organelles with an eye to their role at a molecular level in the cell.

    The origin of the eukaryotic cell was a milestone in the evolution of life. Although eukaryotes use the same genetic code and metabolic processes as prokaryotes, their higher level of organizational complexity has permitted the development of truly multicellular organisms. Without eukaryotes, the world would lack mammals, birds, fish, invertebrates, mushrooms, plants, and complex single-celled organisms.

    http://www.beyondbooks.com/

    http://www.ncbi.nlm.nih.gov/

     

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    Archeobacteria and Eubacteria

     

     

     

     

    Archeobacteria

    .

    1. Inhabit extreme environments.  Thermophiles-hot springs.  Halophiles extremely salty waters, but are found it other diverse habitats.
    2. Differ in eubacteria in structural ( cell wall without peptidoglyacan), biochemical, and physiologic characters

     

    Eubacteria

    .

    1. More numerous than archea bacteria.
    2. Differ in Archeobacteria in structural(cell wall with peptidoglycan), biochemical and physiologic characters.

     

    Eubacteria shapes

    1. Rod shaped-bacilli.
    2. Sphere shaped-cocci.
    3. Helices, spiral, shaped-spirilli and spirochetes.  Treponima pallidum, syphilis.

     

    Colonies

    1.      Diploccoci-2 cocci.

    2.      Streptococci-chains of cocci-strept throat, scarlet fever.

    3.      Staphylococci- clumps of cocci.

    4.      Diplobacilli-2 bacilli.

    5.      Streptobacilli-chains of bacilli.

     

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    Prokaryotic Organisms

     

     

    It appears that life arose on earth about 4 billion years ago. The simplest of cells, and the first types of cells to evolve, were prokaryotic cells—organisms that lack a nuclear membrane, the membrane that surrounds the nucleus of a cell. Bacteria are the best known and most studied form of prokaryotic organisms, although the recent discovery of a second group of prokaryotes, called archaea, has provided evidence of a third cellular domain of life and new insights into the origin of life itself.

    Prokaryotes are unicellular organisms that do not develop or differentiate into multicellular forms. Some bacteria grow in filaments, or masses of cells, but each cell in the colony is identical and capable of independent existence. The cells may be adjacent to one another because they did not separate after cell division or because they remained enclosed in a common sheath or slime secreted by the cells. Typically though, there is no continuity or communication between the cells. Prokaryotes are capable of inhabiting almost every place on the earth, from the deep ocean, to the edges of hot springs, to just about every surface of our bodies.

    Prokaryotes are distinguished from eukaryotes on the basis of nuclear organization, specifically their lack of a nuclear membrane. Prokaryotes also lack any of the intracellular organelles and structures that are characteristic of eukaryotic cells. Most of the functions of organelles, such as mitochondria, chloroplasts, and the Golgi apparatus, are taken over by the prokaryotic plasma membrane. Prokaryotic cells have three architectural regions: appendages called flagella and pili—proteins attached to the cell surface; a cell envelope consisting of a capsule, a cell wall, and a plasma membrane; and a cytoplasmic region that contains the cell genome (DNA) and ribosomes and various sorts of inclusions.

    Bacteria perform many important functions on earth. They serve as decomposers, agents of fermentation, and play an important role in our own digestive system. Also, bacteria are involved in many nutrient cycles such as the nitrogen cycle, which restores nitrate into the soil for plants. Unlike eukaryotic cells that depend on oxygen for their metabolism, prokaryotic cells enjoy a diverse array of metabolic functions. For example, some bacteria use sulfur instead of oxygen in their metabolism

    http://www.molecularexpressions.com/cells/procaryotes/images/procaryote.jpg

    http://www.ncbi.nlm.nih.gov/About/primer/genetics_cell.html

    find out more about prokaryotic cell

    dawnlode this file

    Prokaryotic Cells

     

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    cell intrudaction

     

     درود بر دوستان مهربانم....

    برای زودتر امدن صحفه اول وبلاگ  تعداد پست های نمایش داده شده در صحفه اصلی را کاهش دادم برای دیدن کامل ارشیو در صورت تمایل بر روی ماه ابان در بخش ارشیو ها کلیک کنید....

     

    Cells are the structural and functional units of all living organisms. Some organisms, such as bacteria, are unicellular, consisting of a single cell. Other organisms, such as humans, are multicellular, or have many cells—an estimated 100,000,000,000,000 cells! Each cell is an amazing world unto itself: it can take in nutrients, convert these nutrients into energy, carry out specialized functions, and reproduce as necessary. Even more amazing is that each cell stores its own set of instructions for carrying out each of these activities.

    The word cell comes from the Latin word "cella", meaning "small room", and it was first coined by a microscopist observing the structure of cork.

     

    Cell Organization

    Before we can discuss the various components of a cell, it is important to know what organism the cell comes from. There are two general categories of cells: prokaryotes and eukaryotes.

     
    Figure 1.  History of life on earth

     History of life on earth.

     

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    Landmarks in Study of Cell Biology

     

     find out more about cell theory refer to

    continues part

    1595 Jansen credited with 1st compound microscope                                    
    1626 Redi postulated that living things do not arise from spontaneous generation.
    1655 Hooke described 'cells' in cork.
    1674 Leeuwenhoek discovered protozoa. He saw bacteria some 9 years later.
    1833 Brown descibed the cell nucleus in cells of the orchid.
    1838 Schleiden and Schwann proposed cell theory.
    1840 Albrecht von Roelliker realized that sperm cells and egg cells are also cells.
    1856 N. Pringsheim observed how a sperm cell penetrated an egg cell.
    1858  Rudolf Virchow (physician, pathologist and anthropologist) expounds his famous conclusion: omnis cellula e cellula , that is cells develop only from existing cells  [cells come from preexisting cells]
    1857 Kolliker described mitochondria.
    1869 Miescher isolated DNA for the first time.
    1879  Flemming described chromosome behavior during mitosis.
    1883  Germ cells are haploid, chromosome theory of heredity.
    1898 Golgi described the golgi apparatus.
    1926  Svedberg developed the first analytical ultracentrifuge.
    1938  Behrens used differential centrifugation to separate nuclei from cytoplasm.
    1939 Siemens produced the first commercial transmission electron microscope.
    1941 Coons used fluorescent labeled antibodies to detect cellular antigens.
    1952 Gey and co-workers established a continuous human cell line.
    1953 Crick, Wilkins and Watson proposed structure of DNA double-helix.
    1955 Eagle systematically defined the nutritional needs of animal cells in culture.
    1957 Meselson, Stahl and Vinograd developed density gradient centrifugation in cesium chloride solutions for separating nucleic acids.
    1965  Ham introduced a defined serum-free medium. Cambridge Instruments produced the first commercial scanning electron microscope.
    1976 Sato and colleagues publish papers showing that different cell lines require different mixtures of hormones and growth factors in serum-free media.
    1981 Transgenic mice and fruit flies are produced. Mouse embryonic stem cell line established.
    1987 First knockout mouse created.
    1998 Mice are cloned from somatic cells.
    2000 Human genome DNA sequence draft.                                

     

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    Cell theory


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    plant biology animations

     

    تقدیم به استاد مهربان ازمایشگاه زیست گیاهی 

    خانم یزدان پرست

     

     

    Plants

    1. Chytridiomycetes Wisconsin Online
    2. The Ascomycetes Wisconsin Online
    3. The Zygomycetes Wisconsin Online
    4. Various Botany Animations University of Alberta
    5. Transgenic Plants University of Nebraska
    6. Sucrose Transport by Terry Brown
    7. Life Cycle of a Moss Sumanas Inc.
    8. Sugar Transport in Plants Peerason Canada
    9. What Tree is it? Ohio Public Library Information Network
    10. Cambium Growth Photosynthesis Forest Biology Virginia Tech
    11. Plant Animations to Download Institute of Agriculture and Natural Resources

     

    Ecology

    1. How Ozone is Made Air Info Now
    2. Greenhouse Effect University of California.
    3. Various Ecology Animations University of Alberta
    4. Soil Biology Movies by T. Loynachan at Iowa State University

     

    Animals

    1. Pond Life Videos Florida State University
    2. Various Animal Animations University of Alberta
    3. Interactive Grasshopper Anatomy Iowa State University
    4. Asconoid Sponge Nebraska Wesleyan University
    5. Dictyostelium by Harvey Project
    6. Sea Urchin Embryology Stanford University
    7. The Functioning Animal Thames Valley School District
    8. Bird's Lungs San Diego State University
    9. Earthworm Eating Michele Matossian
    10. Behaviors Sumanas Inc.
    11. Solar Compass Sumanas Inc.
    12. Hibernation BrooksCole

     

    Geology

    1. Resources for Earth Science and Geography Central Michigan University
    2. Plate Tectonics from PBS
    3. US Geology Sumanas Inc.
    4. Gallery of Flash Animations University of Leeds
    5. Animation List W.W. Norton and Company
    6. Plate tectonics C. R. Scotese Publications
    7. Severe and Hazardous WeatherUniversity of Illinois

     

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    online study refrences

     

    Biology
    Video Links - Biological Sciences Topics
    The Online Service for Cell Biology
    PBS - Video links on Evolution
    Ken's Biology Reference Links
    Vritual Dissections
    BioZone: many excellent links to study resources
    Rediscovering Biology Web site
    Interactive animated atlas
    Biology Links
    Biology I Reference Sites
    Biology I Animations, Movies & Interactive Tutorial Links
    John Kyrk Biology Animations
    Animalia Kingdom Reference Sites
    Plant Kingdom Reference Sites
    Cellular Structure and Function
    Biology I Lab
    Tutorials
    Biology Lesson Plan
    On-Line Biology Book
    Biology Activities

    DNA Directory and other Science links
    Photosynthesis
    Mitosis
    Developmental Biology ONLINE
    Kimball's Biology Pages
    Spermatogenesis: Mammalian Testis
    The Mammary Genome Anatomy Project (MGAP)
    Anatomy Of Reproductive System In The Cat
    Aquascope - learn more about marine life
    Talk.origins- Usenet newsgroup
    MARINE PLANKTON PROJECT
    Gregor Mendel

     

    Anatomy and Physiology

    Anatomy and Physiology I WWW Sites
    Web Anatomy
    AP1 Lab Help
    Virtual Lab Project from Stanford
    Anatomy & Physiology II WWW Sites
    Anatomy & Physiology II
    Anatomy and Physiology 2 Lab Help
    Anatomy&Physiology Tutorials
    Cyber Anatomy Tutorials
    Instant Anatomy Tutorials
    Anatomy of Skull
    Skull Module
    Animal Skull Collection
    Heart Center Online
    Heart Animations
    Respiratory System
    Organs of the Thorax and Abdomen
    Human Anatomy Learning Web site
    Maricopa.edu - Heart Anatomy:Interior View
    Upper Extremity Muscle Atlas
    Fetal Blood Vessels
    Cross-sectional Anatomy
    Digital Anatomist: Interactive Brain Atlas
    Textbook: Hole's Human Anatomy & Physiology 9e- Learning Center
    Lecture Outlines from Hole's Human Anatomy and Physiology , 10/e

     Histology
    The HistoWeb
    Anatomy-Histology Tutorials
    Male Reproductive System
    Internet Atlas of Histology
    Ultra structure and Histology of Cell Injury and Death
    Histology - Labs, Tests
    Histology Links
    The University of Pennsylvania School of Medicine - Basic Embryology Review
    Cervical Smear
    Histopathology - Diagnosing Fungal Infections

     


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    Biotechnology Tutorials Online

     


    Dictionaries
    Dictionaries

    Basic Tutorials
    Foods from Genetically Modified Crops (pdf), San Diego Center for Molecular Agriculture march2001
    Plant Biotechnology in Canada - pdf - Crop Protection Institute of Canada, June 2001
    Field of Genes, Making Sense of biotechnology in Agriculture, 4-H Council
    An introduction to the science and issues of genetic modification, gmIssues UK
    Biotechnology in Our Food Chain, Schools Project UK
    Waiter, there's a gene in my food, Australian Broadcasting Corp 1999
    GMO Poster, Cornell (pdf)
    A Guide to Biotechnology in Crop Production, NC State
    Genetic Engineering of Food, Feed, and Fiber: Understanding Genetic, NC State
    Agricultural Biotechnology, a Virtual Tour: "Look Ma, No Seeds in my Watermelon"
    Field of Genes, WhyFiles
    BioZone - Bioresearch Ireland
    GM Food - Safe?, Vega Science Trust - Transcript
    Engineering Crops in a Needy World, Minnesota Public Radio 2000
    Biotechnology Backgrounder, Purdue Univ
    Straight Talk about Biotechnology - DuPont
    CyberSciences - Biotechnologies, Quebec Canada
    GMOs: Looking At Both Sides of the Controversy, Agroecology/Sustainable Agriculture Program

    Intermediate Tutorials
    Editors' & Reporters' Guide to Biotechnology, Biotechnology Industry Organization
    Genetically Modified Crop Debate in the Context of Agricultural Evolution, CS Prakash may2001
    Genetic Engineering in Agriculture, CM Rader june2001
    Unit 9: Transgenic plants I
    Unit 10: Transgenic plants II: economy, environment and ethics
    Biotechnology: Questions & Answers, CCR UC Davis
    UCBiotech, University of California, Berkeley
    SCOPE: GM Food: Genetically Modified Food
    Iowa State's Biotechnology Information Series
    Transgenic Crops: An Introduction and Resource Guide - Colorado St Univ, 1999
    The Biosafety Protocol
    Backgrounder on genetic modification of crops and animals, Univ California 10dec1999
    Dispelling 'Frankenfear' - Pro Global 07july2000
    Designer Seeds, Beyond Discovery.com 2000 ??
    What is Biotechnology?, Lemaux, UC Berkeley
    Innovation - 2000 - AFFA Australia
    Informing the Dialogue About Ag BioTechnology, Cornell
    Council for Biotechnology Information's Brochure
    Biotech Basics - Monsanto
    IFT Backgrounder on GMO, gmoback.pdf download
    Expert Report on Biotechnology and Foods, Institute of Food Technologists aug2000
    GM Foods and the Consumer (pdf), Australia New Zealand Food Authority june2000
    Biotechnology and Food, ACSH sept2000 (pdf)
    Genetically modified crops: the social and ethical issues, may1999 (pdf)
    Agriculture 2000, California Agriculture magazine special Issue
    Agricultural Biotechnology: What is happening in Australia in 2000 - A publication
    Genetically Modified Foods: Harmful or Helpful?, Cambridge Scientific Abstracts april2000
    Genetically Modified Foods, Cambridge Scientific Abstracts
    Biotechnology Educational Resources USDA
    Wisconsin's Biotechnolgy and Food Handbook
    General Biotechnology Information - AfricaBio
    American Corn Growers Association: GMO Brochure
    Biotechnology Classroom Protocols & Labs, NAL USDA

    Advanced Tutorials
    Nat'l Academy Press, The Future Role of Pesticides in U.S. Agriculture (2000)
    Smith Report - Seeds of Opportunity 13april2000 (pdf)
    Nat'l Academy Press, Genetically Modified Pest-Protected Plants: (2000)
    Transgenic Plants and World Agriculture (by 7 national science academies) july2000

    Molecular Biology Tutorials
    New York Times on the Web - requires free registration
    The Composition of Life - animation - NY times
    These animations require  Hypercosm Player plug-in
    Gene Splicing Primer - animation - NY Times
    DNA Replication Process - animation - NY Times
    The Scale of DNA - animation - NY Times
    Educational Courses on the Web
    Principles of Protein Structure
    BioEd: Biology Education Resources
    Protocol Online-You lab's reference book
    Plant Genome Database Tutorial
    Beginner's guide to Molecular Biology
    MendelWeb Homepage 97.1
    Primer on Molecular Genetics (Department of Energy)
    The Biology Project, Univ Arizona
    Molecular Biology - The Biology Project, Univ Arizona
    CEPRAP Educational Software - Virtual DNA Fingerprinting Lab
    Exploring Our Molecular Selves
    Cellupedia
    DNALC: Biology Animation Library
    Bio.com - a Bio OnLine site
    The DNA Files, Soundvision Productions 1998
    The DNA Learning Center
    Molecular Biology: General Information and Tutorials
    BioComputing Hypertext Coursebook

    PCR Methods
    Quick Guide for PCR - Alkami (PDF)
    Recombinant DNA - MIT Biology Hypertextbook
    DNALC: Biology Animation Library
    Molecular biology protocols

    ELISA Methods

    elisa


    Microbiology & Immunology - The Biology Project, Univ Arizona
    Immunology Protocols
    Immunoassay Animations
    Fralin Biotechnology Center: Biotech in a Box ELISA
    StatLIA Demonstration Guide (commercial software package)
    HHMI's BioInteractive: Virtual Labs
    HHMI Virtual Lab (ELISA)

    Plant Transformation

    Plant transformation

    CEPRAP - Plant Transformation
    BioRad Biolistic PDS-1000/He Particle Delivery System (Bulletin_1700.pdf)
    Biolistics - Prof. Ruoff at ruoff@wuphys.wustl.edu
    Biolistic Transformation
    Tissue Culture & Genetic Transformation - Noble Foundation
    Methods & Applications of Plant Cell & Tissue Culture
    Gen. Eng. Techniques
    Agrobacterium tumefaciens: a natural tool for plant transformation
    Agrobacterium T-DNA transformation of plants
    Commercialization agreement reached on the pollen transformation system, SeedQuest 26jan2001
    Unit 9: Transgenic plants I
    Unit 10: Transgenic plants II: economy, environment and ethics

    Genome Projects, Marker-assisted Breeding
    Human Genome Project - multimedia educational kit

    AudioVideo via streaming media
    GM Foods - Safe?, Vega Science Trust (Real/MPEG1)
    UNITE Streaming Video Program, University of Minnesota
    Small Business 2000: Streaming Video (requires paid subscription)
    Biotechnology, Policy, and Society, webcasts of lecture series at UCD
    Future Harvest - Video Messages
    Webcasts, Checkbiotech.org
    Seeds of Opportunity - The Role of Biotechnology in Agriculture 01june2001

    Animation
    The Composition of Life - NY Times (Flash)
    these animations require  Hypercosm Player plug-in
    Gene Splicing Primer - NY Times (Hypercosm)
    DNA Replication Process - NY Times (Hypercosm)
    The Scale of DNA - NY Times (Hypercosm)
    Science GIF Animations

    + نوشته شده در  دوشنبه بیستم آبان 1387ساعت 15:54  توسط شکیب  | 

    Interactive biology animations

     

     

    1. Biology 7th editon McGraw Hill
    2. Life the Science of Biology W.H. Freeman
    3. Essential Study Partner for Biology McGraw Hill
    4. Interactive Biochemistry by Rodney F. Boyer
    5. BioCourse.com McGraw Hill
    6. zeroBio
    7. Pronunciation Guide ...... Prefixes Roots & Suffixes
    8. Biology Animations BBC
    9. Howard Hughes Medical Institute
    10. Chemistry Online Resource Essentials NCSSM

    Chemistry

    1. How do Molecules Interact? .... QuizThomson Learning
    2. Life Organization UC Davis
    3. Acids, Alkalis and Neutralization BGfl
    4. Aqueous Equilibrium Animations
    5. Atom Builder from PBS
    6. Animated Bonds by June B. Steinberg
    7. Hydrogen Bonds and Water from Northland Community and Technical College
    8. Structure of Water by John Kyrk
    9. Salt Dissolving in Water from Northland Community and Technical College
    10. Molecular View of Solution formation Essential Chemistry, 2/e by Raymond Chang
    11. Animated pH scale by John Kyrk
    12. Buffering Essential Chemistry, 2/e by Raymond Chang
    13. Radiocarbon Dating Brian M. Fagan Department of Anthropology, UCSB
    14. Chemistry Animations Essential Chemistry, 2/e by Raymond Chang
    15. Chiral Molecules Nobel Prize Chemistry 2001
    16. Rotating The Water Molecule Physics 2000
    17. Chemistry Comes Alive Journal of Chemical Education
    18. Making Solutions Directions Wellesley College
    19. Periodic Chart and Bonding Iowa State University
    20. Four Types of Chemical Reactions Wisconsin Online
    21. Balancing Equations Creative Chemistry
    22. Phases of Water Tom Greenbowe at Iowa State University
    23. Interactive Chemistry Quiz zeroBio
    24. Energy Conversion Harvard Education
    25. Measuring Volume Using a Graduated CylinderWisc-Online
    26. Reading a Triple Beam BalanceWisc-Online

     

    Biochemistry

    1. onClick Molecules zeroBio
    2. Isomer - Construction Set Fred Senese at Frostburg State University
    3. The Chemical Basis of Life by Terry Brown
    4. Lipid Dehydration by June B. Steinberg
    5. Dehydration Synthesis and Hydrolysis by RM Chute
    6. Macromolecule Tutorial(requires the Authorware Player) by RM Chute
    7. Enantiomers Movie from Prenhall
    8. Amino Acid and Peptide Bond Animation by John Kyrk
    9. Life Cycle of a Protein Sumanas Inc.
    10. Heat Changes a Protein Structure Sumanas Inc.
    11. Protein Secretion Sumanas Inc. (25Mb)
    12. DNA Structure
    13. Journey Into DNA from PBS
    14. DNA anatomy (beautiful!!) by John Kyrk
    15. Nucleic Acids Prince of Wales Collegiate
    16. Biomolecules: The CarbohydratesWisconsin Online
    17. Biomolecules: The Lipids Wisconsin Online
    18. Biomolecules: Proteins Wisconsin Online
    19. Proteins and Proteomics Annenberg/CPB
    20. Interactive Biochemistry by Rodney F. Boyer
    21. Functional Groups 1 zeroBio
    22. Functional Groups 2 zeroBio
    23. Molecular Structure of Fat HHMI

     

    Cellular Structure and Function

    1. Cell Structure in Dutch Gerard Scholte & Ineke Marree
    2. Virtual Scanning Electron Microscope Florida State University
    3. The Evolution of Organelles Sumanas Inc.
    4. Comparison of Prokaryote, Animal and Plant Cells by Rodney F. Boyer
    5. Flash animations of Biological Processes by John L. Giannini
    6. Organize It by Leif Saul
    7. Structure of Cell Membrane Sinauer Associates, Inc., W. H. Freeman Co. and Sumanas Inc.
    8. Stem Cells Sumanas Inc.
    9. Various Cellular Animations University of Alberta
    10. Cell Tutorial from "Cells Alive!"
    11. Simple cell by Terry Brown
    12. Kinesin - Molecular Motor Sinauer Associates Inc., W. H. Freeman Co. and Sumanas Inc.
    13. Cellular Animations by Donald F. Slish
    14. Flagella and Cilia from Northland Community and Technical College
    15. A typical Cell Wisconsin Online
    16. Identifying Eukaryotic Animal Cell Organelles Wisconsin Online
    17. Biologie Cellulaire by Laurent Martorell Académie de Créteil
    18. Lysosomes McGraw-Hill
    19. Cytoskeleton Structure
    20. Interactive Cell Quiz zeroBio
    21. Lipid Bilayer University of Aberdeen

     

    Mitosis/Meiosis

    1. Mitosis with Music University of Wisconsin
    2. Stem Cells GSLC
    3. Stem Cells Explained University of Michigan
    4. Cell Cycle Game (CDK's and cyclins) Nobel Prize 2001
    5. CELL wrapping & DNA replication You Tube
    6. Independent Assortment Sumanas Inc.
    7. Meiosis Sumanas Inc.
    8. Cell Cycle Tutorial from "Cells Alive!"
    9. Cell Death Kuby Immunology
    10. Stem Cell Research Dolan DNA Learning Center
    11. Mitosis and Meiosis - Interactive Exercise by Leif Saul
    12. Mitosis vs Meiosis from PBS
    13. Mitosis/Meiosis Simulation by Jon C. Glase at Cornell
    14. Cell Cycle and Cyclins + Other Cellular Activities BioCreations
    15. DNA Coiling to form Chromosomes
    16. The Cell Cycle Wisconsin Online
    17. How Cells Divide McGraw-Hill
    18. Sexual Reproduction McGraw-Hill
    19. Cell Division - Mitosis and Meiosis Hospital for Sick Children
    20. Cancer
    21. Biochemical Pathways of Normal and Cancer Cells HHMI Outreach Program
    22. Breast Cancer HHMI Outreach Program
    23. Cancer Biology and Cell Technology McGraw-Hill
    24. The Biology of Cancer MCB-HHMI
    25. Cell Biology and Cancer Annenberg/CPB.
    26. Cancer and the Cell Cycle National Institutes of Health
    27. Cancer Warrior NOVA Online
    28. ATR's Function in the Cell Cycle of Normal Cells and Cancer MIT Education
    29. Cancer Quest Emory University
    30. Insidecancer.org
    31. p53: The Guardian of the Genome HMMI
    32. Second Cancers National Cancer Institute
    33. Cancer Diagnostics: Informing the Development of Tailored Cancer Therapy National Cancer Institute
    34. Cancer Biology Cancerquest.org
    35. How Cancer Grows from PBS

     

    Cellular Transport

    1. Membrane Transport Purdue University
    2. Phospholipid Bilayer by Nancy Hughes at Carnegie Mellon
    3. Interactive Cellular Transport by Rodney F. Boyer
    4. Dynamic Membrane by Nancy Hughes at Carnegie Mellon
    5. Construction of the Cell Membrane Wisconsin Online
    6. Passive Transport: Diffusion Wisconsin Online
    7. Diffusion, Dialysis and Osmosis Tutorial by RM Chute
    8. Membrane Structure Tutorial
    9. Passive Transport: Osmosis Wisconsin Online
    10. Osmosis - Examples Colorada State University
    11. Osmosis by Terry Brown
    12. Osmometer Dr. Joyti Wagle at HCCS
    13. L'osmose by Laurent Martorell Académie de Créteil
    14. Plamolysis Dr. Joyti Wagle at HCCS
    15. Hypotonic, Isotonic, Hypertonic by June B. Steinberg
    16. Passive Transport: Filtration and Facilitated Diffusion
    17. Interactive Cellular Transport by Rodney F. Boyer
    18. Passive and Active Transport from Northland Community and Technical College
    19. Transport Processes Requiring ATP
    20. Le fonctionnement des protéines Gs by Laurent Martorell Académie de Créteil
    21. Les transport membranaires by Laurent Martorell Académie de Créteil
    22. Membranes McGraw-HIll
    23. Endocytosis of an LDL EarthLink
    24. Osmosis (thistle tube)

     

    Cellular Respiration

    1. Whole Process and Enzymes
    2. Overall Reaction Dr. Meyer at CUNY
    3. Virtual Cell's Educational Animations MCBE
    4. Cellular Respiration Thomas M. Terry at Univ. of Conn.
    5. Enzyme Tutorial from Northland Community and Technical College
    6. Enzyme Pathways McGraw-Hill
    7. Enzymologie by Laurent Martorell Académie de Créteil
    8. Enzyme Activity by Jim Wanamaker of Lew-Port
    9. Enzyme Reaction - Simulation BBCi
    10. Enzyme Kinetics Wiley
    11. Enzyme Inhibition Wiley
    12. Glycolysis
    13. Gylcolysis by Sue Merkel, Cornell Univ (BEST)
    14. Glycolysis by RM Chute
    15. Glycolysis by John Kyrk
    16. Anaerobic Respiration-Glycolysis and Fermentation by Sue Merkel, Cornell Univ
    17. Glycolysis Animation from Northland Community and Technical College
    18. Glycolysis Donald Nicholson
    19. Acetyl CoA and Krebs (TCA)(Citric Acid) Cycle
    20. TCA (Citric Acid) Cycle by Rodney F. Boyer
    21. Citric Acid Cycle Purdue University
    22. Fatty Acid Respiration Campbell Interactive Chemistry
    23. The Pruvate Dehydrogenase Complex Campbell Interactive Chemistry
    24. Acetyl CoA and Krebs Cycle by June B. Steinberg
    25. Oxidative Phosphorylation
    26. ATP Synthase Gradient: The Movie Virtual Cell
    27. ATP Synthase Movie Thomas M. Terry at Univ. of Conn.
    28. ATP Synthesis(ATPase) Flash Animation Carnegie Mellon
    29. Production of ATP by Oxidative Phosphorylation
    30. Electron Transport by June B. Steinberg
    31. Oxidative Phosphorylation Campbell Interactive Chemistry
    32. Electron Transport McGraw-Hill
    33. Oxidative Phosphorlyation (advanced) Nature Reviews Molecular Cell Biology
    34. Electron Transport by Rodney F. Boyer
    35. Oxidative Phosphorylation Purdue University

     

    Photosynthesis & Plants

    1. Light Absorption
    2. Atomic Absorption of Electromagnetic Radiation University of California.
    3. Jablonski Diagram Molecular Expressions
    4. Light Reaction
    5. Harvesting Light
    6. Photosynthesis Animation by Net Learning
    7. Photosynthesis by John Kyrk
    8. Photo systems 1 and 2-Oxygenic Photosynthesis by Sue Merkel, Cornell Univ
    9. Photosynthesis Animation by John L. Giannini
    10. Energy Capturing Photosynthesis animation by June B. Steinberg
    11. Photosynthesis Animation - Light Reaction Central Michigan University
    12. Photosynthesis McGraw-Hill
    13. Dark Reaction - Calvin Cycle
    14. Calvin Cycle Animations by June B. Steinberg
    15. Interactive Photosynthesis Biochemistry by Garrett and Grisham
    16. Overall
    17. Metabolic Processes Terry Brown
    18. Authorware Photosynthesis Tutorial Taylor University
    19. Locating the Photosynthesis Reaction Center
    20. Photosynthesis Forest Biology Virginia Tech
    21. Photosynthesis University of Aberdeen

     

    Heredity

    1. Genetics Tutorials(java script) RM Chute
    2. Java Genetics zeroBio
    3. Independent Assortment Sumanas Inc.
    4. Genetics animations California State University, Chico
    5. Mendel's Peas BioLogica
    6. Genetics Games ThinkQuest
    7. A multimedia Guide to Genetic Disorders Your Genes Your Health
    8. Tokyo University Genetics Study Group Tokyo Medical University
    9. Karyotype Activities Genetic Science Learning Center
    10. Animated Karotyping University of Glasgow
    11. Karyotype Analysis Monmouth University
    12. Exploring Our Molecular Selves" Video Genome Project
    13. What is Inheritance? Genetic Science Learning Center
    14. Genetics of Development Annenberg/CPB
    15. Mutation

     

    DNA,DNA Replication, Sequencing, Mutation

    1. Chromosome 11 Flyover Cold Spring Harbor Laboratory
    2. DNA Replication Fork President and Fellows of Harvard University
    3. Le Southern blotting by Laurent Martorell Académie de Créteil
    4. DNA Replication McGraw-Hill
    5. The Meselson-Stahl Experiment Sumanas Inc.
    6. Basics Acadia University Powerpoint animation
    7. DNA Replication (Advanced) Science Media
    8. DNA Replication E-Bio @ Horton
    9. DNA Replication Animation
    10. DNA Replication by John Kyrk
    11. Recombinat DNA Technology University of Delaware
    12. DNA Microarray Method Davidson College
    13. DNA Replication/Gel Electrophoresis by Jim Wanamaker of Lew-Port
    14. Sequence For Yourself from PBS
    15. Gel Electrophoresis Dr. Thomas G. Chasteen at Sam Houston State University
    16. Mutation Exercise
    17. DNA Repair Nature
    18. DNA Coiling To Form Chromosomes
    19. Maize Mutants Koshland Science Museum
    20. Chromosome Description Dexter Pratt
    21. Regulating Genes through DNA Methylation National Cancer Institute
    22. DNA Replication Wiley
    23. DNA Sequencing Wiley

    Transcription and Translation

    1. Translation President and Fellows of Harvard University
    2. Protein Biosynthesis University of Aberdeen
    3. Transcription to Translation E-Bio @ Horton
    4. Virtual Cell's Educational Animations MCBE
    5. Molecular Genetics in Dutch Gerard Scholte & Ineke Marree
    6. DNA Workshop from PBS
    7. Transcribe and Translate a Gene Genetic Science Learning Center
    8. Protein Synthesis McGraw-Hill
    9. Animation of Transcription
    10. mRNA Splicing Sumanas Inc.
    11. PolyRibsomes Sumanas Inc.
    12. Translation Movie University of Colorada
    13. Why do firflies glo? Genetic Science Learning Center
    14. Animation of Translation
    15. Life Cycle of mRNA Sumanas Inc.
    16. Transcription Game(Click here to view this site) Thinkquest
    17. Protein Synthesis by Jim Wanamaker of Lew-Port
    18. Protein Synthesis (advanced) by Nancy Hughes at Carnegie Mellon
    19. Protein Synthesis Wisconsin Online
    20. RNAi
    21. RNAi Animation Nature
    22. RNAi Mechanism Animation Nature
    23. RNAinterference with Gene Expression Promega
    24. RNAi Explained Nova

     

    DNA Genetics

    1. How Tiny Machines Switch On Genes/Silence Of The Genes Rockefeller Education
    2. Electrophoresis Thinkwell
    3. The Biotechniques Virtual Laboratory University of Utah
    4. PCR Animation Dolan DNA Learning Center
    5. PCR Mutagenesis Science Media
    6. Southern Blot Animation Dolan DNA Learning Center
    7. Jumping Genes (AC/DS Transposition) Dolan DNA Learning Center
    8. Plasmid Cloning Sumanas Inc.
    9. Polymerase Chain Reaction, Recombinant DNA, Cloning
    10. Construction of a DNA Library Sumanas Inc.
    11. The Human Genome Project animations
    12. Gene Almanac Dolan DNA Learning Center
    13. Plasmids, Restriction Digestion, DNA gels UCSC Core Lab - Robert Kuhn, PhD
    14. Paternity Testing Sumanas Inc.
    15. DNA Discovery Modules University of Massachusetts
    16. Chromosome 11 -Sickle Cell Gene Channel 4
    17. Inherited Disease Koshland Science Museum
    18. Gene Technology McGraw-Hill
    19. Control of Gene Expression McGraw-Hill
    20. Genomics Annenberg/CPB
    21. Genetically Modified Organisms Annenberg/CPB
    22. Gene Gun purdue.edu
    23. Genetic Engineering of Insulin ABPI Resources for Schools

     

    Evolution

    1. On Becoming Human Institute of Human Origins
    2. Evolution Lab by Leif Saul
    3. Movies from "evolution" a PBS Program
    4. Human Evolution Annenberg/CPB
    5. Timeline of Discovery The Leakey Foundation
    6. Prehistoric Life BBC
    7. The Origin of Modern Humans HHMI
    8. The Genographic Project National Geographic

     

    Viruses

    1. Retrovirus Life CycleW. H. Freeman and Co. and Sumanas, Inc.
    2. T4 Phage Animation Purdue University and Seyet LLC
    3. HIV Lifecycle Flash Animation by GalaxyGoo
    4. Can you get AIDS from a mosquito bite? GalaxyGoo
    5. Herpes Virus Replication animation by Karin Christensen
    6. LabWork University of Leicester
    7. Herpes Infection Expert Reviews in Molecular Medicine
    8. Virology Flash Animations University of South Carolina School of Medicine
    9. Viruses McGraw-Hill
    10. See HIV in Action by PBS from PBS
    11. HIV life cycle and Drug Interaction by Roche
    12. Animation of HIV life cycle RNCEUS
    13. HIV Drug Resistance BioCreations
    14. HIV and AIDS Annenberg/CPB

     

    + نوشته شده در  دوشنبه بیستم آبان 1387ساعت 15:52  توسط شکیب  | 

    microscope history

     

    The Beginnings

     

    Of the five senses, the most important is sight.It aids in the process of gathering information about the environment that we are part of.However, this visual gathering is adequate only to a certain point. Beyond this point, the human unaided eye fails to help us; the amount of detail that it can provide is severely limited.In order to overcome those limitations, humans started to develop instruments like the magnifying glass, the spectacles, the telescope and the microscope.

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    + نوشته شده در  دوشنبه بیستم آبان 1387ساعت 11:36  توسط شکیب  | 

    How to Use the Microscope

     

    PowerPoint on the Microscope

     

     

    Types of Microscopes

    Light Microscope - the models found in most schools, use compound lenses and light to magnify objects. The lenses bend or refract the light, which makes the object beneath them appear closer.

    Stereoscope - this microscope allows for binocular (two eyes) viewing of larger specimens. (The spinning microscope at the top of this page is a stereoscope)

    Scanning Electron Microscope - allow scientists to view a universe too small to be seen with a light microscope. SEMs donÕt use light waves; they use electrons (negatively charged electrical particles) to magnify objects up to two million times. (View Images)

    Transmission Electron Microscope - also uses electrons, but instead of scanning the surface (as with SEM's) electrons are passed through very thin specimens. (View images)

     

    Parts of the Microscope

     

     

    Quiz Yourself on Naming the Parts of the Microscope!

     

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    + نوشته شده در  دوشنبه بیستم آبان 1387ساعت 11:18  توسط شکیب  | 

    Hook 's microscope

     

     

     

     

    "Of all the inventions none there is Surpasses

    the noble Florentine’s Dioptrick Glasses

      For what a better, fitter guift Could bee

    in this World’s Aged Luciosity.

      To help our Blindnesses so as to devize

    a paire of new &Artificial eyes

         By whose augmenting power wee now see

    more than all world Has ever doun Before.”

     

    Henry Powers, 1664

     

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    + نوشته شده در  یکشنبه نوزدهم آبان 1387ساعت 23:58  توسط شکیب  |